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Improving Matrix-vector Multiplication via Lossless Grammar Compressed Matrices 1-gen-2022 Ferragina, Paolo; Manzini, Giovanni; Gagie, Travis; Köppl, Dominik; Navarro, Gonzalo; Striani, Manuel; Tosoni, Francesco
Matching Reads to Many Genomes with the r-Index 1-gen-2020 Mun, T.; Kuhnle, A.; Boucher, C.; Gagie, T.; Langmead, B.; Manzini, G.
The Alternating BWT: An algorithmic perspective 1-gen-2020 Giancarlo, R.; Manzini, G.; Restivo, A.; Rosone, G.; Sciortino, M.
Practical Random Access to SLP-Compressed Texts 1-gen-2020 Gagie, T.; I, T.; Manzini, G.; Navarro, G.; Sakamoto, H.; Seelbach Benkner, L.; Takabatake, Y.
Efficient Construction of a Complete Index for Pan-Genomics Read Alignment 1-gen-2020 Kuhnle, A.; Mun, T.; Boucher, C.; Gagie, T.; Langmead, B.; Manzini, G.
Efficient Construction of a Complete Index for Pan-Genomics Read Alignment 1-gen-2019 Kuhnle, A.; Mun, T.; Boucher, C.; Gagie, T.; Langmead, B.; Manzini, G.
A compact index for order-preserving pattern matching 1-gen-2019 Decaroli, G.; Gagie, T.; Manzini, G.
Lightweight merging of compressed indices based on BWT variants 1-gen-2019 Egidi, L.; Manzini, G.
Rpair: Rescaling RePair with Rsync 1-gen-2019 Gagie, T.; I, T.; Manzini, G.; Navarro, G.; Sakamoto, H.; Takabatake, Y.
External memory BWT and LCP computation for sequence collections with applications 1-gen-2019 Egidi, L.; Louza, F. A.; Manzini, G.; Telles, G. P.
Prefix-free parsing for building big BWTs 1-gen-2019 Boucher, C.; Gagie, T.; Kuhnle, A.; Langmead, B.; Manzini, G.; Mun, T.
Space-Efficient Merging of Succinct de Bruijn Graphs 1-gen-2019 Egidi, L.; Louza, F. A.; Manzini, G.
Inducing the Lyndon Array 1-gen-2019 Louza, F. A.; Mantaci, S.; Manzini, G.; Sciortino, M.; Telles, G. P.
A new class of searchable and provably highly compressible string transformations 1-gen-2019 Giancarlo, R.; Manzini, G.; Rosone, G.; Sciortino, M.
Handbook of Data Structures and Applications: Computational Biology 1-gen-2018 Kurtz, Stefan; Lonardi, Stefano; Ferragina, Paolo; Manzini, Giovanni
Lyndon array construction during Burrows–Wheeler inversion 1-gen-2018 Louza, Felipe A.; Smyth, W. F.; Manzini, Giovanni; Telles, Guilherme P.
A census of tandemly repeated polymorphic loci in genic regions through the comparative integration of human genome assemblies 1-gen-2018 Genovese, Loredana M.; Geraci, Filippo; Corrado, Lucia; Mangano, Eleonora; D'Aurizio, Romina; Bordoni, Roberta; Severgnini, Marco; Manzini, Giovanni; De Bellis, Gianluca; D'Alfonso, Sandra; Pellegrini, Marco
Prefix-free parsing for building big BWTs 1-gen-2018 Boucher, Christina; Gagie, Travis; Kuhnle, Alan; Manzini, Giovanni
External memory BWT and LCP computation for sequence collections with applications 1-gen-2018 Egidi, Lavinia; Louza, Felipe A.; Manzini, Giovanni; Telles, Guilherme P.
Block Sorting-Based Transformations on Words: Beyond the Magic BWT 1-gen-2018 Giancarlo, R.; Manzini, G.; Restivo, A.; Rosone, G.; Sciortino, M.
STAble: A novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow 1-gen-2018 Saggese, Igor; Bona, Elisa; Conway, Max; Favero, Francesco; Ladetto, Marco; Liò, Pietro; Manzini, Giovanni; Mignone, Flavio
An encoding for order-preserving matching 1-gen-2017 Gagie, Travis; Manzini, Giovanni; Venturini, Rossano
A Compact Index for Order-Preserving Pattern Matching 1-gen-2017 Decaroli, Gianni; Gagie, Travis; Manzini, Giovanni
Compressed Spaced Suffix Arrays 1-gen-2017 Gagie, Travis; Manzini, Giovanni; Valenzuela, Daniel
Wheeler graphs: A framework for BWT-based data structures 1-gen-2017 Gagie, Travis; Manzini, Giovanni; Sirén, Jouni
Lightweight BWT and LCP merging via the gap algorithm 1-gen-2017 Egidi, Lavinia; Manzini, Giovanni
Encyclopedia of Algorithms: Boosting Textual Compression 1-gen-2016 Ferragina, Paolo; Manzini, Giovanni
Encyclopedia of Algorithms: Dictionary-Based Data Compression 1-gen-2016 Gagie, Travis; Manzini, Giovanni
Encyclopedia of Algorithms: Burrows-Wheeler Transform 1-gen-2016 Ferragina, Paolo; Manzini, Giovanni
Efficient and Compact Representations of Some Non-Canonical Prefix-Free Codes 1-gen-2016 Fariña, Antonio; Gagie, Travis; Manzini, Giovanni; Navarro, Gonzalo; Ordóñez, Alberto
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